As per your comment on post #16,
"To do that, remove the dummy load resistors and test each rail's resistance to ground as well as to each other... and make sure to leave your meter connected for a few second so that the readings stabilise - that should make it clearer to see what is going on.)"
Fyi, i removed all the 3 dummy load resistors 15ohm, 51 ohm and 270 ohm for all the 3 rails. The resistance test on 2k scale are as follows:
3.3v to ground="1"(this means infinite on my dmm)
5v to ground="1"
12v to ground=1.932k...
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